NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075446_10124359

Scaffold Ga0075446_10124359


Overview

Basic Information
Taxon OID3300006190 Open in IMG/M
Scaffold IDGa0075446_10124359 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031253Metagenome183Y
F031664Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0075446_101243591F031253AGAAGGMADVQLSEEALRFLEKAEKSIKKIEPVNSGLITNPDEKDFNFWNTAGRLTLSAGQGVVNAIEEGGDFIDENIVSLGGLSFGDGDGK
Ga0075446_101243592F031664N/AYTYQTEQKKLLEGTFFNAFDASFNKGVNKERASEAGLEYESRIDLYVQSNPDATYNEQQQYARDLRLNLVDKYDDVSTEEITAFNLTENKFNVVRETASVFEWYSEYKKNPSLKDAEGKPIRNTLVSLAKLNGYVDEDGKVQINKFFNDYVEILKSRQEG*
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Institute for Fundamental Biomedical Research
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