Scaffold Ga0075447_10064777

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075447_10064777

Scaffold Ga0075447_10064777

Overview

Basic Information
Taxon OID	3300006191 Open in IMG/M
Scaffold ID	Ga0075447_10064777 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1317
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F004166	Metagenome / Metatranscriptome	450	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075447_100647771	F002915	AGG	MRKLLLLLLTIPVIGQSEEAFTNEQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYEACAQTKYENYICGDK
Ga0075447_100647772	F004166	N/A	MKTLLLLILVVPLISCSDHQTNDSWGSYATNKETQKQEFWFTSYKTRDACIADMSWQLEGGDDPNKKRISNWHTKPYGCHFMSNNKWLSMYYYLVYRDEGLGCLWESNNPNVRIKYSVTLKTFVNAPEQGRCILGD*

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