Scaffold Ga0075445_10150571

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0075445_10150571

Scaffold Ga0075445_10150571

Overview

Basic Information
Taxon OID	3300006193 Open in IMG/M
Scaffold ID	Ga0075445_10150571 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	837
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006641	Metagenome / Metatranscriptome	368	Y
F021864	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075445_101505712	F006641	AGGAGG	MPKATCIQSFSSGDGIAYESGVEYDVPAATLKANPDYFKKQSGTAENKMEDTVEDKSEAAE*
Ga0075445_101505713	F021864	GAGG	VATRHTYATADDLRDYLAGTSFSSGWTSDAGSIRRILEAASRRIDLYCEGGTFGPLTETRLYDIGSGSLVQSPQYAVLAGTDAIATTVALANVIPLDGWLVSTTTVTAYDDTDRGASTVLTEGYANDFFLMPYNSAPKTIFKLNEGTSNTLDAGQQTLSILGSWGYTADTLS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.