NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082206_138237

Scaffold Ga0082206_138237


Overview

Basic Information
Taxon OID3300006225 Open in IMG/M
Scaffold IDGa0082206_138237 Open in IMG/M
Source Dataset NameBiogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 99 accuracy
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwegian Sequencing Centre (NSC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1304
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Mixed Substrate Biogas Reactor → Biogas Reactor Microbial Communities From Swedish University Of Agricultural Sciences, Alnarp, Sweden, And As, Norway That Are Enriched On Cellulose

Source Dataset Sampling Location
Location NameAlnarp, Sweden
CoordinatesLat. (o)59.8152338Long. (o)17.6620518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F066897Metagenome / Metatranscriptome126Y
F103496Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0082206_1382372F022008AGGAMTMNDVEMLREALNDLSKQVQTLSEDNRASFGRIYDRLTKIETQMSERECQFKRYEKTIENHETRIRLVEGELGTLRDVPERLWHVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGE*
Ga0082206_1382373F103496AGGMQIDDRIRRLPLTKLIALCFTIFTCVLIVLDVTSLCTLTERSADLLKWLGSTIIVGYFGKSAYEHKVNSDAGRRIDQ*
Ga0082206_1382374F066897AGGAGGMSNKTLWLIIIVVILLSAIFLWYNHTSTQETLIKAQETIEETKQALRESEEALKKIDKIAQEIKDVSISAEKAGDEYVKEIRFVSDDEFLNVVNEYSTLMGRTSGVKDGESFYQVIPLLIL*

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