Scaffold Ga0097621_100338961

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0097621_100338961

Scaffold Ga0097621_100338961

Overview

Basic Information
Taxon OID	3300006237 Open in IMG/M
Scaffold ID	Ga0097621_100338961 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1335
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: South Gull Lake, Michigan
Coordinates	Lat. (^o)	42.405765	Long. (^o)	-85.399014	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084427	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0097621_1003389611	F084427	N/A	SSVKTAPPLAWAASRAAVVALVAFAAGCGGSNPIGPMPSPSPSPTAQPGGPITGRYTLSITPSASCAMPRTPITFLMTGADAGVTTHPGVQVLLDPNGFRLELEAVYESFAIHGGLGTKNDPEGAVSEQGQRVWIHAIAAGPVLRSTDSRGEVLTGTLAGYLALATVGGFEGELGTCSAPDHALSLRTR*

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