NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068504_1069951

Scaffold Ga0068504_1069951


Overview

Basic Information
Taxon OID3300006304 Open in IMG/M
Scaffold IDGa0068504_1069951 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2051
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008625Metagenome / Metatranscriptome330Y
F013899Metagenome / Metatranscriptome267Y
F062843Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0068504_10699513F062843GAGMNIWIEYWEKSKEPSKNTHAQIREQANWVPPDPKTVRKRFCQGREDANRYANSLQEQGYHVIIKQDNGGY*
Ga0068504_10699514F013899N/AMFPDTSEIEEGETGQFELFRSGESFMKAGHGKFFDLEDVKKKLSESGQDLFTNR*
Ga0068504_10699516F008625AGGAMEEIAGNRLVWRHIQRENQLMILNPLGYDPIKDKDEITSRNRRKTDDPYIRATIEHADYKKWKNNTAERR*
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