NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068469_1201350

Scaffold Ga0068469_1201350


Overview

Basic Information
Taxon OID3300006306 Open in IMG/M
Scaffold IDGa0068469_1201350 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007052Metagenome / Metatranscriptome359Y
F036420Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0068469_12013501F036420N/AMEVKIHARNIDSRLRIALYAMTSFAMAKLVPSNRLRNNVSINVHLKHHEENGEAMLEDYANRYHPRDFKVIIDHHRAEIDDYNRTRSNTE
Ga0068469_12013502F007052GAGMEKIETYFVARLLKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERVL*

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