NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1111733

Scaffold Ga0068471_1111733


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1111733 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3308
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006609Metagenome369Y
F028526Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0068471_11117331F028526GAGMEDYLGAVKTKPELFLKLTKRISRPEYTMNFMEDRNGRKAMFYNYKGPEFNEGDCVLLKATIAEYRKDKYDGSKPLTYLNRVTVIENKGSTKKSRIKKVARNNIRK*
Ga0068471_11117337F006609AGGAGMENDLLKRLIAIIARFDQGLTDAEGGEGIDKPAIREAKLILSSDDDTSFVYDLNHNDAAEIVGQFSLFKKGEDEVVTPIPISSFVGEGKIQGIEIKDILLN*
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