Basic Information | |
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Taxon OID | 3300006310 Open in IMG/M |
Scaffold ID | Ga0068471_1146890 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5870 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (47.37%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
Associated Families | 11 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000615 | Metagenome / Metatranscriptome | 984 | Y |
F001048 | Metagenome / Metatranscriptome | 793 | Y |
F002874 | Metagenome / Metatranscriptome | 524 | Y |
F004768 | Metagenome / Metatranscriptome | 424 | Y |
F007052 | Metagenome / Metatranscriptome | 359 | Y |
F007055 | Metagenome / Metatranscriptome | 359 | Y |
F008625 | Metagenome / Metatranscriptome | 330 | Y |
F012919 | Metagenome | 276 | Y |
F020372 | Metagenome / Metatranscriptome | 224 | Y |
F030563 | Metagenome | 185 | Y |
F058211 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0068471_114689010 | F000615 | GAGG | MCRLRLFYECSDGAMGFAEHVMRYEDDIVSFIKHWKTGGRMVITEHIDLV* |
Ga0068471_114689011 | F001048 | N/A | MKIVSTKQFWWRFNYLKRNGGEITVTDRTSEMDVKEFNRIESLVNKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIS* |
Ga0068471_114689012 | F004768 | N/A | MKTATIEILNEGETIFGTRTNGEYFVRRYEDEEEMGGGFFKTMKEAETEVREYQTEK* |
Ga0068471_114689013 | F007055 | N/A | MIWIAIVMTWNPVIYTIDKEFTSEVDCWNYYDTGVGENKMLNTYGIQVLDHQGNKPDKEYHKKHRPPHREYPIRLYKGVDGWTRGLIWLTCDIKQQ* |
Ga0068471_114689015 | F008625 | AGG | LEEEIAGNRLVWRHIQKENQRMMLDPLGYDPIKDIDEIHSRNRRKTDDPYIKATMKNADYKKWKENTAERR* |
Ga0068471_114689017 | F020372 | N/A | MNIEQKTNKSTIRIYIDGKEMLYSHQNIVAAIHNFLPYLTNDDLDEMKKTLHTLKDHRKQKEYLAKLETLKHSWPYPDTIKQ* |
Ga0068471_114689018 | F058211 | N/A | MIPIENNSWDYVQRLIEREINSAFKLRIKEDNNKMKFKEDHPYMIRLDEVLKQYSVVKVADDNGAHHGADFEEMKQVILDSLFTNYLGNTIRK* |
Ga0068471_11468903 | F030563 | GGA | MWPSTRICSGCLNVFNRAECDIDISDFWNLPEELAWACSTKCANDAKDNWLKPKKMQNNA |
Ga0068471_11468905 | F002874 | GAG | MKEKIDLSLNRSLEELESSYWEFVEATEGEDSSEWSKSVQEDLSALEGYLMKMDLL* |
Ga0068471_11468907 | F012919 | N/A | MKISRKKLNLEILKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTISDTPTTKQQIKYVEKNSL* |
Ga0068471_11468909 | F007052 | GAG | MEKNETYFVARLFKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSVRV* |
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