Scaffold Ga0068471

Basic Information
Taxon OID	3300006310 Open in IMG/M
Scaffold ID	Ga0068471_1258654 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006310 Open in IMG/M

Scaffold ID

Ga0068471_1258654 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4251
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4251

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F002745	Metagenome	533	Y
F023622	Metagenome / Metatranscriptome	209	Y
F034603	Metagenome	174	Y
F072442	Metagenome / Metatranscriptome	121	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_12586542	F023622	GAGG	MKTFKEFKEKSPITLIAEQVYFKVSIPDMSTMFMRASSESAVKLDMRKKLKPDVVKEVTIERVTKAEMRKIYRAMGQGKEDEKETEEEK*
Ga0068471_12586545	F072442	AGGA	MKTFKEFFQLGVTKPSKFDVQNYLNQLGTRLMQLPDIIRNIEKHFKNIKKLKLDRSGKKVLSFEEHIPEEITKRDIKKNK*
Ga0068471_12586546	F002745	N/A	MIRFKQYLREFAVQSTSDYVFDTTSGNSSSLKIPISGPMFKRVWPDTIRATVFHTTDLSGFKNLGKLEGGKKSISAFFSMFARYMETGVATSGDIPIIAEMDADVLVSARDDIWSQVDKTGRRWVELSWFANAQLGRTGPEFSKVEKDLNTLITNLVKKHLTPILGKNAVVREHEYELWSNMKSHLKAGREGGGNRLRLVIKDYFDGIEKVLKKNKKVMGNIIYGYTKSKRMTDNAWDEQIVNNIKVKKVHFIKQDTEKFPGLQFGVDQATEYADSKNWPIKTWDASIELEAYTREVVKKEIGR*
Ga0068471_12586547	F034603	AGGAG	MKTFKQYLKEAPPKWTESLSTMLFDLPRAGLKDVLIPISPAILKRIWPKPPRTTVFHLTDYEGIKKLKGLQGKQKSISAFFNITARAIDDGVATSGGYAVELIGDILAAAPDDLSTRPDKTGRRWLAFSTLVNPIDFGHFGDGIGGGAKLKGMENDISEMMIEIIMQYADDPGKSGMPNVNKSWIALGKEYKREGKILSQIIRDYIDGMEKIMKKYAAKLKSVLLDYVKIRASKPDPDSGDVPEWDELVVNNFQIQKIHVGWEYGEDFQDDDDIEGFPFELYPDTGDLVDYIVRTVQKIKL*
Ga0068471_12586548	F001930	N/A	ISQMKIPLTSKTMSWIFNVQLTRVTVFHVTSGIGLKKLMRLQNKKKSISAFFNMTADYIESGIKTAGGLVAELDASILMSSKSDIMSMPDKTGRRWIELHDLDRKETMHAELEKMLIDLAIKHDPRNKEYLKTVPEIGIGVWYKLQTDLLTKFDPAKAGKKMALIITDYIDGVNTILKKHKKDIQGAIHGYIVRRGTVAVKHPSGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTYNTATREADWVKTDIIPKLGKIPHKHWKSTKELTTYISQVADAEVRTLRRSKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068471_1258654

Overview

Ecosystem & Geography

Associated Families

Sequences