NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068478_1126450

Scaffold Ga0068478_1126450


Overview

Basic Information
Taxon OID3300006311 Open in IMG/M
Scaffold IDGa0068478_1126450 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2891
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001334Metagenome / Metatranscriptome720Y
F003285Metagenome / Metatranscriptome496Y

Sequences

Protein IDFamilyRBSSequence
Ga0068478_11264506F001334GGTGGMKFKEYLQVNADDSIEQVMSGEWISKSRTTWKATDSEDNKIEIHNDGHDPELNGESWTVHTNTFAPKAFAYFTKQFIKEVKPSEVTHARTRIYPSPSN*
Ga0068478_11264507F003285GAGGMPEQESIHHLQTEVQTLKIKDEFRTKELDALMNKLSDTSTKLNALSENIGRLLAGQDLHKTSDNEVRDELKLLHSRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGIATAFAWLLTNIIPKFLNN*
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