Basic Information | |
---|---|
Taxon OID | 3300006311 Open in IMG/M |
Scaffold ID | Ga0068478_1144313 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4588 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 1000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002030 | Metagenome | 601 | Y |
F081449 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068478_11443134 | F081449 | AGGA | LTVKIELYKVDPYKIWWIGEKTFTRRGQEETFVRFIIDPDGKQVGDFTYVEKDFVTPYGNMGVVNPNNVEPTGASSFEDREFEERR* |
Ga0068478_11443135 | F002030 | AGGCGG | MIGFLIFGLVVLSTICLWILIEERKSWKFLVWFIPVFLVLVTSTYVTYTSVLGFPKVGIPEKGMYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYTRKKHDALEGVKGKAEEGKFMVLGEDTSQGAGNELVGDEGGERGGGYTIGGDVSFYEWDFTENMPSKNKQEE* |
⦗Top⦘ |