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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006311 Open in IMG/M |
| Scaffold ID | Ga0068478_1160285 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hawaii |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3779 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 1000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002745 | Metagenome | 533 | Y |
| F006423 | Metagenome | 373 | Y |
| F006919 | Metagenome | 362 | Y |
| F041436 | Metagenome | 160 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068478_11602851 | F041436 | N/A | IIKKYSKPLKSIFTDYTKKRTLDPDSDSGEKAMWDELVVNNFKIQKIHVGPEFAPDFEDQDDIDGFPFELYDTPEDMVDYITRTVQKIKI* |
| Ga0068478_11602852 | F006423 | N/A | MKSFKQHLDEKTEYYLDTSQDNTEKYVAYDGSYWYTGKIGIRGGDRYLKFAATHGKNSYFEKAKLKKTTPEKLEKDAGMTVDFKKLYKR* |
| Ga0068478_11602853 | F002745 | GAG | MKTFKSYLTEFAQQSTSDYVFDTHSVNSSSLKIPISTSMFKRIWPDTIRATVFHTTSLEGLEGIKKLEGGKKSISAFFSMMSRYMETGVASGGDIHVVVEMDADLLVSARDDIWSVVDKTGRRWVEMSWFANAQWGGTGPKFDKVEKDLNTLIKNLVNKHLPKDVTKGEHEYELWSNMKSHLKAGREGGGSRLRLVIKDYFDGVEKVLKKNKEVMGNIIYGYTKSKRMTDNAWDEQIVNNIKIKTVHVWKTNRDDVWGEKEIKQHITDVHKWPIKVWDAPIELEAYTREVVKKEIGR* |
| Ga0068478_11602857 | F006423 | GGAG | VVHKMKTFKQYLKEETEYYLDTSQDNTDKYVAKDDGGFWYTGRVGIKGGIMFLKFVATHGKDSYFERAKLKKTTPEKLEKDAGMTVDFKKLYKR* |
| Ga0068478_11602858 | F006919 | GAG | MKTFKAYLTEFAQQSTSDYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLAGLENLKKLEGGKKSISAFFSMMSRYMEGGIASGGGIVVEMEADVLVSASDDIMSQVDNKGRRWVEMSWFANAQRYGTGPAFGKVERELNDLIRNLVLKHLEPILGNRARTEHEFVLWGNMKRELKDSKKLSLVIKDYFD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |