NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068478_1236958

Scaffold Ga0068478_1236958


Overview

Basic Information
Taxon OID3300006311 Open in IMG/M
Scaffold IDGa0068478_1236958 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)962
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008649Metagenome / Metatranscriptome330Y
F095624Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0068478_12369581F008649AGGMIKGENNKMTELETLMLDVTNTLNHNGFDDVRITPQGGEDFSIRVGYWDRIEPSLIETMEEYHSVRIREDIIEDEDCGELHYYFVEPVDEDTGYTLNELNELESNYTEEALYLESVG
Ga0068478_12369582F095624AGGAGMTLQEVLDRVNDIIDNHNHHELDLLRSDLEDDIIWENKMKKYKNKA*

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