NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068472_10245493

Scaffold Ga0068472_10245493


Overview

Basic Information
Taxon OID3300006313 Open in IMG/M
Scaffold IDGa0068472_10245493 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2679
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F007052Metagenome / Metatranscriptome359Y
F007771Metagenome / Metatranscriptome345Y
F045361Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0068472_1024549310F045361GAGGMVRMLMMMGLVVGAYVAGYNGVTHVEVMEMVENSMSYVEGMLEYAEGFGEEAGSVVEGVL
Ga0068472_102454933F000615N/AVRRNQNNIVSGLERPVNIMCRIRLFYECSDGSMGFAEHLMPYSEDIAGFIKHWKTGGRMVITEHFDLV*
Ga0068472_102454934F007771N/AMRTIIHAKCIDEKVRLALYGMLEYSATKLFPRRMKNVSIKLHLKHYDYEGEALIEEGTKTKNPRNFKIVIDPYRIEKDDWGRELNYSEWVCKILRTLAHEMVHVKQYIMGELTYKRGALCYMREKVGWMSEDEYYCSPHEVEAYGKEKWLQLGYTAVWNKIESGEI*
Ga0068472_102454939F007052AGGAGMERNETYFVARLIKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERVL*
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