NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068487_1026354

Scaffold Ga0068487_1026354


Overview

Basic Information
Taxon OID3300006315 Open in IMG/M
Scaffold IDGa0068487_1026354 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10138
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001066Metagenome / Metatranscriptome788Y
F043442Metagenome156Y
F064085Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0068487_10263544F064085AGGAGMADIKIVASGTCAECGHSQKDHEGNTVCDVEGCDCTNIGSY*
Ga0068487_10263548F043442AGGMEALEQCKVKNVMLSFKYSYANITKFRNKFENIFVVAGTKTEPERYYELLKKHRESYDYATQFDVFYKMEETLKYYKKEREMGIDWTLPVLQENYLNHLARLQLEPNSYVCLGEVRGRAETEDQIRKLPANQNFHGLAKGRFMNYVTPIFGSLDTSGWISAAMSKKCEVWNNRSTQVMYFGDKGKQMKPMLNHACEIHKDFLEVINVKKQDILDGDYYALLKAPMALLYLPMCEQLGILNDNFNL*
Ga0068487_10263549F001066N/AMTEDIFKIKPLDKHGAKVQLDGRKAFSPFNSAKHLKTANIPAECDQCVYRSIDAGGNGKCPKYEKGALCAIRKDFVAMINELDTRDPAHVKTMLDMLAKLSFENVLMALTESKFDGNIPDRNTKSEVNTLLKIISTIGEISNKIVVTEEQKFNKKGDIENIFRQIKAQKSD*
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