NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099581_100599

Scaffold Ga0099581_100599


Overview

Basic Information
Taxon OID3300006319 Open in IMG/M
Scaffold IDGa0099581_100599 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 764062976
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25942
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089057Metagenome109N
F103435Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0099581_10059917F089057GGAGGMINVIPLIAKKYNRKGDTSGSLKSLIDDLNCIGDTNDVLLFLTSIPRETKYSLAEAFSVIVSNDEYRNIFRTSIVFLNIDLDYHELLLTAIKSESYDIICMINKAIPTPDLFLAKNNYECLTIALDKSYAVFDKVLGMVVSQIKHTASSKEGRALGIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVEDINSRTVLSRYLNNM*
Ga0099581_1005998F103435N/AMKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDVLNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE*
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