Scaffold Ga0099623

Basic Information
Taxon OID	3300006322 Open in IMG/M
Scaffold ID	Ga0099623_1000032 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006322 Open in IMG/M

Scaffold ID

Ga0099623_1000032 Open in IMG/M

Source Dataset Name

Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	100591
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (18.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

100591

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (18.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F077403	Metagenome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0099623_100003216	F022002	N/A	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFEYEGHVRIDHAYIAYTDKELDRARSAEKESEN*
Ga0099623_100003217	F022002	N/A	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0099623_100003218	F022002	N/A	MKNIYSPSFRSMSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEDGIHAGSNDVDYTVTGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLVVRGFKHEGHFGFKDAYITYSDDELDRARSAEKESEI*
Ga0099623_100003240	F077403	N/A	MKITMPIYRGLPLAILLLSAMSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLLTPQLDHDWYQVTYLLEHMNHSVGTETTGTEGVLKPFVHHLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPNHYEGYQLYQGLVRGDSIWIEM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099623_1000032

Overview

Ecosystem & Geography

Associated Families

Sequences