Basic Information | |
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Taxon OID | 3300006325 Open in IMG/M |
Scaffold ID | Ga0068501_1138238 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 760 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001048 | Metagenome / Metatranscriptome | 793 | Y |
F007052 | Metagenome / Metatranscriptome | 359 | Y |
F055786 | Metagenome | 138 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0068501_11382381 | F007052 | AGGAG | MENETYFVARLLKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRMTNVGDICVEIDKHFFGYEISSEELLNHSSRVYI* |
Ga0068501_11382382 | F001048 | GAG | MKIVSTKQFWWRLNHLKRNGGEITVTDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAVWDACGVKDIPTLAKAYGIK* |
Ga0068501_11382383 | F055786 | GGA | MICSYCYKSQIVGKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKDRTWMDHKPVAIFGKKKKAEKKKTIEAIT |
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