NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068501_1198231

Scaffold Ga0068501_1198231


Overview

Basic Information
Taxon OID3300006325 Open in IMG/M
Scaffold IDGa0068501_1198231 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1268
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026709Metagenome197N
F040683Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0068501_11982311F040683AGGAGMKKYRVWGYETQGYYIDLDANNKQDAHDKAMDVNRDNWIEGNDGESTCFDINKKDMEVIK*KLIMEIRDGR
Ga0068501_11982313F026709N/AMYIILIKDNHRYKLYTNEIFTTEKETLDYVKRSKFKKDVKWKVEEFDSKYFKS*

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