NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068483_1276737

Scaffold Ga0068483_1276737


Overview

Basic Information
Taxon OID3300006330 Open in IMG/M
Scaffold IDGa0068483_1276737 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)841
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038275Metagenome / Metatranscriptome166N
F049042Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0068483_12767371F049042N/AMAEFQALQTATAEWKPHQIAKAGDIASMAKAAGDLAEVVKETLSLASAGMEVVKLLAQLQNINPLLIALDALADEVLIAIQNIKEAGFWYLYVDPYFIRNVAAYPAFTYGFEQLRNPAGDRLWLAKDNLTGDFAQTTTTPTQAQLDSQEVIPHLATPRKMVAGGYNPYEGKGVADPLA
Ga0068483_12767372F038275AGGAGMAHPEGKWAEAEIRRDDIKDLMKKTLKLATMYSDLLAIKREGWENVLRAQLKKDAKEKEKQNG*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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