NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068488_1723771

Scaffold Ga0068488_1723771


Overview

Basic Information
Taxon OID3300006331 Open in IMG/M
Scaffold IDGa0068488_1723771 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)907
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010477Metagenome / Metatranscriptome303Y
F026028Metagenome / Metatranscriptome199Y
F099450Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0068488_17237711F099450N/AEFTNEVECWNHYEGSYGESRFGTQNLTHQGVPPGKGFHFTWDHLEYPIRTYRGKDGLGQVWLTCDIKGRYEDL*
Ga0068488_17237713F026028AGGAGMSICVNCYHRIMHKKAIEVGQLWNNEPFLAVVCSDKCKEEIEKKVTDRTWMVMQPYPKTESDDGLPKAITDKQFGV*
Ga0068488_17237714F010477N/AMKLRYAIFVPYLIFIGIMGGNVLVDALVIGLTLAMYDFFFGNGGGGGRPA*
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