NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068500_1101992

Scaffold Ga0068500_1101992


Overview

Basic Information
Taxon OID3300006332 Open in IMG/M
Scaffold IDGa0068500_1101992 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7139
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007343Metagenome353Y
F053336Metagenome141Y
F065849Metagenome127Y
F078817Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0068500_110199211F078817AGGAGMNKPLTRKVKDHRGNEHEVYKWYWMKGWEFYQTEPSDEFGVTFGYMTNCPFPEWGSQHEAELNDISSVTAERFDLWELAPPQGWEWLEKEN*
Ga0068500_110199212F053336AGGAGMQEYFEYLAELQASGTMNMMWAPTMLQADFDLDKKEAREIFSKWCESLKSG*
Ga0068500_110199221F065849AGGAGMLKIDDKVKFHYLKQFKDELKSGQVLTDYATTSESYSGKVVDVRNIIDQPVSSETIRRDNIKGRRSEVLYTVELDGDEGVKAFYDGRMVGTEVLPKTKRGVWKLMASAFKRRKPQTA*
Ga0068500_11019925F007343GGAGMRVSDLQPADYPQSPSVELPNSDAHRLFTNDFNKQSFIEAHGDVEIVWNERYSYWEVPAFAESRRIYGEAKQRACATWGCE*
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