NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068500_1113787

Scaffold Ga0068500_1113787


Overview

Basic Information
Taxon OID3300006332 Open in IMG/M
Scaffold IDGa0068500_1113787 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4776
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002485Metagenome / Metatranscriptome555Y
F058216Metagenome135Y
F085805Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0068500_111378718F002485GGAGGMRQQIDKKSLYYEHQGSNTIYYSYNTTVAVKTPIDTYVSENVWSITTAKHLNRIEELTGSNKEYRMRYKDFREFCINNNVNKHYN*
Ga0068500_11137876F058216GGAGGMMVQRKMIGQLIKENHWSVKGLADSLKITKEDIIKWEKLNKRYKNLKKKFTR*
Ga0068500_11137879F085805AGGAGGMKSKSISEDADKIVNGLLVCKPLADEVYNKLRVLALKDEEDFRNKRFQERVSANNNSNCGG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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