Scaffold Ga0068480_1123400

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068480_1123400

Scaffold Ga0068480_1123400

Overview

Basic Information
Taxon OID	3300006335 Open in IMG/M
Scaffold ID	Ga0068480_1123400 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3226
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013815	Metagenome / Metatranscriptome	268	Y
F080505	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068480_11234006	F013815	GGAG	MYFVQYEKTLPPWYSGTDKIQAETSEDAVKEFYKHHDSFEDRVRSVREVQDTYQK*
Ga0068480_11234008	F080505	N/A	MDADVLVSARDDIWSQVDKTGRRWVELSWFANAQLGRTGPEFGKVEKDLNTLITKLVKKHLTPILGKNAVVREHEYELWSNMKSHLKAGREGGGNRLRLVIKDYFDGIEKVLKKNKKVMGNIIYGYTKSKRMTDNAWDEQIVNNIKVKTIHIWPDKPGVFRQTEDEIKKQITDIKNWSIKAWDTTMDLEIYTREVVKKEIGK*

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