NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068502_1291838

Scaffold Ga0068502_1291838


Overview

Basic Information
Taxon OID3300006336 Open in IMG/M
Scaffold IDGa0068502_1291838 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4915
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013815Metagenome / Metatranscriptome268Y
F023622Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0068502_12918383F013815GGAGMYFVQYEKTLPPWYIGTDKVQAETSEDAVKEFYKRHDSFEDRVRSVREVQDTYQT*
Ga0068502_12918385F023622GAGGMKTFKEFKEKSPITLIAEQVYFKVSIPDMSTMFMKASSESAVKLDMRKKLKPDVVKEVSIERVTKAEMRKIYRAMGQGKEVEPDEKEKEE*

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