NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068481_1239198

Scaffold Ga0068481_1239198


Overview

Basic Information
Taxon OID3300006339 Open in IMG/M
Scaffold IDGa0068481_1239198 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2964
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002874Metagenome / Metatranscriptome524Y
F012919Metagenome276Y
F020795Metagenome / Metatranscriptome222Y
F022974Metagenome / Metatranscriptome212Y
F038414Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0068481_12391981F002874AGGAGMKEKIDLSLNRSLPELESSYWEFIDATEGDDSANWPVSVQEDFSALEGYLMRQDRL*
Ga0068481_123919810F020795AGGAMRTATLEVLNEGELIFGSRTNGSYFVREYEDNEEVAGSFFNTEEEAKTYIETLNEK*
Ga0068481_12391984F038414AGAAGMTREEQRDNTINEFYKKRTSPKTLQIQASKTAHSQAEWLHVSTSEGEGQGTYDVGRRVMKRERLADKKLRAKQAKAA*
Ga0068481_12391985F012919GGAGMKISRKKLNLEIDKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTVSDTPTTKQQISYVEKNSL*
Ga0068481_12391988F022974GAGMEKNETYFVAKLSKKGEFLSSDIFETLESARLWAMKETKLLVSDSFLRKCKADDVIVEIDKHFFGYEISSEELLKNSTRVV*
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