NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068481_1359105

Scaffold Ga0068481_1359105


Overview

Basic Information
Taxon OID3300006339 Open in IMG/M
Scaffold IDGa0068481_1359105 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F010479Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0068481_13591051F010479GAGMKSFIQHLKEFAQFSTSDIVFKNRGQGSGSTALNIPISGPMFKRIWPDTIRTTVFHTTDLDGLEKLKRLEGGKKSISAFFSMMSRYMETGVATSGDVHVVVEMEADVLVSAKDDVWSQVDNKGRRWVEVGWFANAQSGGT
Ga0068481_13591052F000245AGGAMKTFNEYSLDDKMDKYVSDEIKKRKLAKFPVNATDDIKIRMKPNKPAFKFPSPTGEMMIHVFLRKMAPPAKKHTMAFNYQLEDK*
Ga0068481_13591053F002715AGGMPEEELQSVKLEVGLLKNEVEVRGRQIETLLSKLDLTADKLQELTVQIIKLNTRQEDYLRHTSNMTDEFKILHTRIGDLHDKQLASQKEIEIRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKD*
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