NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068503_10613610

Scaffold Ga0068503_10613610


Overview

Basic Information
Taxon OID3300006340 Open in IMG/M
Scaffold IDGa0068503_10613610 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1919
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F004768Metagenome / Metatranscriptome424Y
F008561Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0068503_1061361011F000615GAGGMCRLRLFYECSDGTMGFAEHVMRYEDDIVGVIKHWQTGGRMVITEHIDLV*
Ga0068503_106136104F004768GAGMKTATIEILEEGETIFGSRTGGEYMVREYEEGEEMGGGFFKTMEEAETSVREYQRSEGR*
Ga0068503_106136106F008561GAGMKFDELIEHYERAIGFESTVKGVPMSEENLELCRKFVTDVHDCPRKDVRVMFRGPRTSTANATMKKDARSFDVYHTPRYR*
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