Scaffold Ga0099954_1023051

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099954_1023051

Scaffold Ga0099954_1023051

Overview

Basic Information
Taxon OID	3300006350 Open in IMG/M
Scaffold ID	Ga0099954_1023051 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5873
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	75
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006662	Metagenome / Metatranscriptome	367	Y
F016980	Metagenome	243	Y
F019152	Metagenome	231	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_10230512	F006662	GAGG	MRTLTTKEYELISKIYNSTDEIEANVAFEFGLQNDLYYQLFHSYEETKK*
Ga0099954_10230518	F019152	AGGAG	MEHTKGILLECNLSEEEINTVIEALSRDYVENDPETLEKEYQLQGKLREIISTFYTKIDAQKFTQMQVESIKGSTL*
Ga0099954_10230519	F016980	AGG	MKYKELLEQLRTLTKEQLELETLVMIRDKEKFVSPISGLFFVTEFDEYEEDLETDQPYLSLSFV*

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