NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099954_1029676

Scaffold Ga0099954_1029676


Overview

Basic Information
Taxon OID3300006350 Open in IMG/M
Scaffold IDGa0099954_1029676 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5599
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001918Metagenome617N
F002334Metagenome569N

Sequences

Protein IDFamilyRBSSequence
Ga0099954_10296764F002334GGAMTLGVFHQVYTRPKATEEAIKSFRQFHPDNPYVLICDGGKSFHRIAKRYNCLYVHEEDNLGYRDHTHVSGIYGMTKEEVLEWLRRFRLACTLCNTDHILMMEDDILIRGEINVPETWEFAGQAKPGNLLQEEFMSYLTEKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIFDEEFDYIKNNLCGNLGWVDVWMPMYYFLCGKQYRHNNLLTETTSNPIWTISKEPIVHQYKVHYE*
Ga0099954_10296767F001918GGAMKIALCFAGQPRFINLMNFGNLTDDHDVTTYAHFWWDDEYRGDMFAWNSELKYPDDYDPIHHFEQRMNPKKLVWEKYPKFDMSPYKMVSQMEFPLSDEIVRQSIYRQKCQWTSVKKAVDLVDDEFDIVIRMRTDLEFHDKVPLEACKGNGLFMMNGSYQAGAGREYCDWFYCGPHKRVQQFDPLQVYDDFYADGIRHMHDLVIETLRTLQIPHAVLDLKAWMMDRSKIK*
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