NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099953_1033646

Scaffold Ga0099953_1033646


Overview

Basic Information
Taxon OID3300006351 Open in IMG/M
Scaffold IDGa0099953_1033646 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1890
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001993Metagenome / Metatranscriptome607Y
F014388Metagenome / Metatranscriptome263N
F101342Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0099953_10336461F101342N/AMTTVLNRDSIQVKRDLQRRVENWVIEYCNALEENFKQYSINSYKRNIDNPTEVSKGYKSYYQE
Ga0099953_10336462F001993N/AMGILSLTSEQLRYKMKHLGVLCPDRSVANDEQFYELYSKFKDVIEDTEYNIDIVDCLTALHCAMEDFEMYA*
Ga0099953_10336463F014388GAGGMSSLHHEEILEDCFEVAMESFRINNKLTHEQLQELITISKGTYDAICSNAYKLFQDRCI*
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