NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0075021_10053590

Scaffold Ga0075021_10053590


Overview

Basic Information
Taxon OID3300006354 Open in IMG/M
Scaffold IDGa0075021_10053590 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2334
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NamePennsylvania, USA
CoordinatesLat. (o)41.1289Long. (o)-78.4195Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005065Metagenome / Metatranscriptome413Y
F005764Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
Ga0075021_100535902F005764GGAGMKCLMYLLIIGVSLFAFAQVPVVPDAAGLGSGRKAPTFPLAVLQPIPFEFRGIRVGDEMKEAERKFLAWKIPSPFSRPGLCSSDGITRIETCTDVLETGEYVNMTMLDQRVAQVYVSTDRRSQGNTYNSYVLALTTKYGSPDKRETKYYHNDVEAGSSGEHLRWLNGDQYMEGSEIERAITIGSRALDAKIAEMEHVYERN*
Ga0075021_100535905F005065N/AMELRHERMIVIMMDANHISERLASVRQEISDLKVINARYWVKSQHTALDKSAHALRQGRLLGIKQELSEMMKRCL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.