NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068871_100154254

Scaffold Ga0068871_100154254


Overview

Basic Information
Taxon OID3300006358 Open in IMG/M
Scaffold IDGa0068871_100154254 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1960
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: South Gull Lake, Michigan
CoordinatesLat. (o)42.405765Long. (o)-85.399014Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018773Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0068871_1001542542F018773AGGMPTSTRGQQYWHDPVGCGRCNVRNMEGLAAAVLLIAILLGVLLVIGGLVFLLAQRLPKRSAYPPRKPKNRWIGVGGVILVLLIIGLWAGIKSASNPQPQPARPLPNCPTGGIWTDMQGLCGQL*
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