NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068871_100489738

Scaffold Ga0068871_100489738


Overview

Basic Information
Taxon OID3300006358 Open in IMG/M
Scaffold IDGa0068871_100489738 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1107
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: South Gull Lake, Michigan
CoordinatesLat. (o)42.405765Long. (o)-85.399014Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009468Metagenome / Metatranscriptome317Y
F018740Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0068871_1004897381F018740AGGAMGILIKAPTRRREPTLTQVDPQGNTNDMRGALHIREVVRITGLRREQLYMWQ
Ga0068871_1004897382F009468N/AMFGFGKNNRDPLADVKSAERWLASFPANDPLAVHAEVLAELGRIAEPDARRSPQRLEVLLYLDAQCEGLRKSLTAQYIEHAARSSKIEHQLWSALFDLTQAFLIAYYAFSREVSHHAQSAKWQQSLPELLCRQIVHMGLDAKIRLYRYEQWIPAKWAELHALFTLACSRQFERQQLVIGPGGSSTTIE
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