 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006358 Open in IMG/M |
| Scaffold ID | Ga0068871_100501828 Open in IMG/M |
| Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1094 |
| Total Scaffold Genes | 1 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacteriaceae incertae sedis → ant, tsetse, mealybug, aphid, etc. endosymbionts → aphid secondary symbionts → Candidatus Regiella → Candidatus Regiella insecticola | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: South Gull Lake, Michigan | |||||||
| Coordinates | Lat. (o) | 42.405765 | Long. (o) | -85.399014 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F085841 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068871_1005018281 | F085841 | N/A | SFANVHANPDPLQWQRAESFFYSMPFPPLRDYECLYSLFNPYAERSRGTLTLYDQFGVKLRDQPYDLSAHSSLLLDLSRGEYISGVRETFSKGPRSGSKPNLRGGDHGGTIAVTNEKGSVKNFGYLLIKQAQSARFSVEHPIHQQSYEPLPSSVPFDSLGRLKAKNVLYTPLVFNSKKIGGITLESSFHLSSGAPIEEALWLSPFITDSNGDVVWQMGKGSPVPKSISEKQIEHGVIKLGGQQSCILKVGELNLVKGFSGGLSLAISPLSNHTLMKVELRATEWNSATFTHFRPGLASAHAYQKSVHRAGLATDYIGSGARLESRDRKIVRDEIIAVINIDENNLTGKPLLEIFSSGGLFAKVP |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |