NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068676_1144001

Scaffold Ga0068676_1144001


Overview

Basic Information
Taxon OID3300006359 Open in IMG/M
Scaffold IDGa0068676_1144001 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1400 MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2125
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F085751Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0068676_11440011F085751GGAGGMSDAIAWIIAFGVIFALVNSNAADGILSALDLSDNLKRAVDWARGVRGVPAGVSAACFFILAYVFGALAYRYDLVPTWRFIQPVANDVLATGAEWL
Ga0068676_11440013F005028GAGGMRDDDLRAAMQFFAGRLRGAELDPTRLLRWTRHKLRNDAQSVAELMLTVGYRATYIRYFLRYHIRNVDPETDSEDVVLVVADLQSAAKKLRQPYRDLAAVCLRWGYVHETVVQMLEKALERKR*
Ga0068676_11440015F008499AGGAMKSRSKSEPRWKRKERDAVRALQAIFGRVSDPSLARLLTSTGRAGHLTRFGVDGFVGNNPGFVVEVKARKRMLTKPAIDALLQTVDRAARFERIPLFVVVFGDDVPARTENGARVDREWVMMPRRVLDELVGKEKKNE*
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