Scaffold Ga0068664_1200908

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068664_1200908

Scaffold Ga0068664_1200908

Overview

Basic Information
Taxon OID	3300006380 Open in IMG/M
Scaffold ID	Ga0068664_1200908 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_B MetaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3327
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium branchiophilum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.539	Long. (^o)	-110.798	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006183	Metagenome / Metatranscriptome	379	Y
F024799	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068664_12009082	F024799	AGG	MVMLPPEKVPVTPGGKPENVAPVAPVVLYVIGVIAVFTQTVWLSVPGAEVRVIG*
Ga0068664_12009086	F006183	AGG	MVMLPPEKVPVTPVGKPENLAPVAPVVLYVIGVIAVFTQTVWLSVPGSEVRVMVLLGCTMMVPVAVTFPQPPVKVTV*
Ga0068664_12009089	F006183	AGG	LKVPVTVGVPEMVMLPPEKVPVTPGGKPENVAPVAPVVLYVIGVIAVFTQTVWLSVPGAEVSMMVLLGRTMMVPVAVTFPQPPVKVTV*

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