NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075510_11121580

Scaffold Ga0075510_11121580


Overview

Basic Information
Taxon OID3300006405 Open in IMG/M
Scaffold IDGa0075510_11121580 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1055
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045370Metagenome / Metatranscriptome153N
F067121Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0075510_111215802F067121N/ALLRKKPTFFEKAKSTATSYGSKAKAKGMDAFGKMQKTKLYKDASNSIGELSAKYKKLPKNYKTGIKVAGATAVVGGAYAAGKSKRKS*
Ga0075510_111215804F045370N/AMNRIFPTSSGTNVSGDLLKKAKQHIKTGKKFINKKVMPSAAKNYKSYVAPTVGLFKGAANIATGVGKLALRNPLLAAGTYVAAKAFNPKGKFAKGKKFHEFGDAGKVLSKGGKKIFYG*

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