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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006405 Open in IMG/M |
| Scaffold ID | Ga0075510_11124683 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA1 (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1525 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017488 | Metagenome / Metatranscriptome | 240 | Y |
| F030452 | Metagenome / Metatranscriptome | 185 | Y |
| F052627 | Metagenome / Metatranscriptome | 142 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075510_111246831 | F030452 | AGGAG | MAGVINVTSGNQAILTLGNTAPLAEPGAVGGLAIPLVQDLTLNTSPGTVRYSTLDSTASSAFTTVVENSVSLNMLLDDDVFFGNAGVTNNSVATNGLWTTSNNKTEIFFSVAFEGSDSADYFIKGKGFIGGLAPSASIDQAVWISPM |
| Ga0075510_111246832 | F052627 | AGG | MSKRSDLITQITTNIAAHTDFTISQELPFDSGGIPLYNKNLKTVYVDEQEIAVEELYSTLDQGVVNETTTTINAYLSVDAKNQLSDINTVVANLLVARNVISGTIDSTSDYETAIAEDVITYTFEYNFTTV* |
| Ga0075510_111246833 | F017488 | GAGG | MAFITDGGGNVISFAEYTDLLQKDQRLLESNIIKIPAESGFADVTDFLEDICEKSTDRILLKLKASTWWQSYNSYVGNPITNLNALPNVNPNLIDPANKLNRRQQFTDLCVYYAFAQYILPLIADFGNPESEEVSKIQYYDAKFNDLFNELIAIADWYDYDNSGTVDADEKAITYARTRRTRSRRSIVQVR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |