NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069787_11398319

Scaffold Ga0069787_11398319


Overview

Basic Information
Taxon OID3300006417 Open in IMG/M
Scaffold IDGa0069787_11398319 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0110018, Gp0110022, Gp0110020
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics, Aalborg University, University of Queensland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)584
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge → Enhanced Biological Phosphorus Removal Bioreactor → Enhanced Biological Phosphorus Removal Bioreactor Microbial Communities From The University Of Queensland, Australia

Source Dataset Sampling Location
Location NameThorneside, Queensland, Australia
CoordinatesLat. (o)-27.485973Long. (o)153.190699Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053659Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0069787_113983192F053659GAGMKSVTKTQPKRQNRVVTLYLGKTLAEYKDLILTEGGINRLIQQVEVADSLNWGHLADGHQPDCPRCLQFTHHDSYSRAVKHFDGTQSAVSLIRVRCLECGAVFTIQPSFLVRYKRYETDALEKLMTLLFITE
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