NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100062_111500

Scaffold Ga0100062_111500


Overview

Basic Information
Taxon OID3300006462 Open in IMG/M
Scaffold IDGa0100062_111500 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2 of subject 159207311
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1907
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080164Metagenome115N
F103432Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0100062_1115002F080164N/AMRPTSFVLSLLLGMVGLAPCAAQQVTLRERASAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVHRDLMDDFAKRCRATLGLGVRTAPRLFGIKGMHVYGVQKDKSRQAVDEYVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0100062_1115003F103432N/AMKLIHSLCSLSLLLALSGLFCTTACQDEAEPTRAAWLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLSRQLHVTMDGKTIFRRHTLPSVSAYSLRVVAVGDTIYRQKESDAQFSADLDALFRQSIGIAPRLFGVRELSVVGIDRKGKPRDLGNYSYPLLQGKRRNVNFRTREGVFHEHYEAASVDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY*
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