Scaffold Ga0082250_10049622

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0082250_10049622

Scaffold Ga0082250_10049622

Overview

Basic Information
Taxon OID	3300006465 Open in IMG/M
Scaffold ID	Ga0082250_10049622 Open in IMG/M
Source Dataset Name	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Center for Biotechnology (CeBiTec), Bielefeld Univeristy
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	935
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	77.950787	Long. (^o)	-1.627126	Alt. (m)		Depth (m)	5500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025751	Metagenome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082250_100496222	F025751	GGA	MDSETRMWMRLHNLIDEDNWELIVYIYRVNANGRKITPYLAKWNMHAGLLDSIWDEFGTGEYHLMIRDGKTMVFTGTIGVARPLRR*

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