NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082250_10368601

Scaffold Ga0082250_10368601


Overview

Basic Information
Taxon OID3300006465 Open in IMG/M
Scaffold IDGa0082250_10368601 Open in IMG/M
Source Dataset NameDeep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCenter for Biotechnology (CeBiTec), Bielefeld Univeristy
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)77.950787Long. (o)-1.627126Alt. (m)Depth (m)5500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040868Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0082250_103686011F040868N/AMEFKMKEATTKQEAIISLLDVQSNQPVLLPDNTVLTEDGMQSLSFQVVRDLYVKVKSDYYNSQDNSKRF*
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