Scaffold Ga0100229_1021763

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0100229_1021763

Scaffold Ga0100229_1021763

Overview

Basic Information
Taxon OID	3300006481 Open in IMG/M
Scaffold ID	Ga0100229_1021763 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6548
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012228	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100229_10217634	F012228	N/A	MVNDSIGLSLWQRILKILKTFLINFKSFFSTFNPDVLQIIQLTFIYFFAVVDLLYAVLNNVFSLGYLPEMLLPFFPIIKSILQSPIFQIWGSPEKVFFLSYVVIEFMIVRSVFKFSKLVKYNILLIFAMLMVQGLAISYWDVLFHREIASPVAKWAYDEGTLIHTDKSLAIVFFFNTFVIFMLAYMYLYIRAIQGKFATISGMEWLTDSVAFWLRIKTPTMRFGKRRKK*

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