NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0100229_1037680

Scaffold Ga0100229_1037680


Overview

Basic Information
Taxon OID3300006481 Open in IMG/M
Scaffold IDGa0100229_1037680 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)994
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F082819Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0100229_10376802F082819GGGGGMDYTKNELALIDFISNINKYFYYIGEDDDLIPFPRYEIRERLDKYVSQFMKSIEVEGDDD
Ga0100229_10376805F001026AGGAGMTHTLKLNDLELTALITHLEGESEHMCESRLNCSNPSETPDIKEVLLNRVYEKAFTMGWDAHINPKVDFDLHKNEDRIFKYK*

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