Scaffold Ga0070744

Basic Information
Taxon OID	3300006484 Open in IMG/M
Scaffold ID	Ga0070744_10000301 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006484 Open in IMG/M

Scaffold ID

Ga0070744_10000301 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14054
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (61.54%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

14054

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (61.54%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025748	Metagenome / Metatranscriptome	200	Y
F029757	Metagenome	187	N
F038679	Metagenome	165	Y
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F081348	Metagenome	114	Y
F093882	Metagenome / Metatranscriptome	106	N
F103267	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000030112	F081348	GGAG	MFEKVPYGVKVRVRGNEQAGFIAEYVICPYRFLSFMDNWNLISRYTHTPFTKHGTFPTLELAKEAAMTKYDSLINHFRHDEEQKKIAEAQRKVVWKHP*
Ga0070744_1000030124	F025748	GGAG	MEIFALLGEWDYEGSVLLGVYASEDEARTAHGVYTRDGDRFIQRYYVERRTLGAPVDSDEYRIYIG*
Ga0070744_100003013	F029757	AGGA	MLTLSDINTLTNSKDGDIYSDLYKDVYGSRPRYAQFRDLEEFQDDYDFLCNKLDEQLEQQQVEQARNFVEFVARVEETMQIVEGATRERAIEIIADAEGISEDEFDFYGLEILEYRFELKFGSISRWLSE*
Ga0070744_1000030137	F093882	GGAG	MTNSDYLTMAENRFASVQRYFPNSSEFNRLFNIILDMTSKMSPEERDMHNAKKIETPTAKAARLKEEQRVLDQMSMNKDSNSI*
Ga0070744_1000030146	F038679	GGAG	VTNFLETIKWLGTICVIIAASCRAFEFHAVDLILSIFGAGLWAYVAVVAKDKALFVVNAFIVSILIVGVIV*
Ga0070744_100003016	F047683	AGGA	MTLTVEQIESTFAAPTEGLADSYYPVLAYWIPIAKLEEVRAAYRAANTTIRIRYRGPRTVSVGREMSRPDKTTYLRSRHRAMQDCLIADATHFTVYDYTAR*
Ga0070744_100003017	F103267	GGAGG	MEVELFTFPTMENPKAVEDTFCDLLNAKRRGESLPVEALDWMDTANNWLLESK*
Ga0070744_100003018	F054874	GGAG	MPNEAKGGTFAPADMELLKRALHYYKDMLTRIEESERSLSPELTQVANLLHRIGRIA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070744_10000301

Overview

Ecosystem & Geography

Associated Families

Sequences