Basic Information | |
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Taxon OID | 3300006484 Open in IMG/M |
Scaffold ID | Ga0070744_10003468 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4737 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (88.24%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007525 | Metagenome / Metatranscriptome | 349 | Y |
F016662 | Metagenome / Metatranscriptome | 245 | Y |
F030094 | Metagenome / Metatranscriptome | 186 | Y |
F043404 | Metagenome | 156 | Y |
F070119 | Metagenome | 123 | N |
F071246 | Metagenome | 122 | N |
F072347 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070744_100034681 | F043404 | GGA | MIDLKDPLLIKLADDIAGLHIDTGIELEQWETAYDFVKHFYNTEEYVQIIIREKK* |
Ga0070744_1000346811 | F071246 | GGA | MGKSQTESVADKIVALLADGRISQAQWRLWIPRRITENNKMIIANAKNFADGINEVIENEEIGISKELLFDYQTGKENGQ* |
Ga0070744_1000346812 | F072347 | AGGA | MDNRTKAEILVQFTQDNFNDEMYEEFFDYNDLGIPLSIAITQDMVILTDSGEQLLEETWIELCLLFGADPNGEYETIDDVTGE* |
Ga0070744_100034682 | F016662 | GGAG | MTYLVAMTEVIYDEEYIIKEMLETGEYGINAHPISHEAMVEFVKDREWQIEHNLFLAKYDIPVIITIKDEDGTDLFFAENKMQEIK* |
Ga0070744_100034683 | F030094 | AGGAG | MKLRGIFEGTFESVWSMEVPQAEWDSYLEQHPDFDENDRDDIQEMWEHFKSIGCYDEIDDTVDTDVIMTGIETYNVEVEIN* |
Ga0070744_100034687 | F007525 | GGA | MKTLEGVTVTYAEMIPTSKQMAEFYVWQDGCESYATITYLDRTVEVERNGEMYLSIPDLVNGELSEHYQNIVKYSDHLQDIGIDDDIQLTQFIKTISNSGYQVYHMNPWWEVFSHNEDMGEVYDTFYEAVDGGIDYITDDSNWED* |
Ga0070744_100034689 | F070119 | GGAGG | MNLNSYKAFDFVIPNCLEPGDIIEWEEEIYTVKKFDLLSDGFIIYAVDEMEDDVELLIPDNIVLSLMEEQ* |
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