Scaffold Ga0070744_10012168

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070744_10012168

Scaffold Ga0070744_10012168

Overview

Basic Information
Taxon OID	3300006484 Open in IMG/M
Scaffold ID	Ga0070744_10012168 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2552
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029757	Metagenome	187	N
F047683	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1001216810	F029757	AGGA	MLTLRDINAATNSRDGDIYSDLYKDVYGSRPRHAEFASIEEFDTDFEALSHMLDKQIESEAEYQQIYFDKFVARVEETLQIVQGTTRERAIEIIAEAEGIRAAEFEFYGLEILEHELNLKYGSIARWLSE*
Ga0070744_100121689	F047683	AGGA	MTLTIKQIESTYAVPADATRQNYYPVRAYWIPIELREQVLAAYRETNTRVRLRYRGPRSVSIGREMTRNDKTTYLRSRHRAMQDCLIADATHFTVYDYTSR*

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