NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074054_11738948

Scaffold Ga0074054_11738948


Overview

Basic Information
Taxon OID3300006579 Open in IMG/M
Scaffold IDGa0074054_11738948 Open in IMG/M
Source Dataset NameSoil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Source Dataset Sampling Location
Location NameLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017887Metagenome / Metatranscriptome238Y
F041370Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0074054_117389481F041370GGAGMTIEPATATSEPATATSEPTTARSEPATATSHYLSLRQAVRPAILAHQLLAGDQERAGTLAAECEDLLYLTRELLKAAGRARILAVVPAPRMPDESGSDRQAQLLEAYADAGLLWTKVVGSSLALAGALIERGEWEDVRAL
Ga0074054_117389482F017887N/APRSNLLIVGGEEHGHGLLLATVLSAAYQRSPGHVRFTIAEFTRPSSPFHGFFDPVRNLPHEVRIADRRTVADELDDLAADLEARLEGSGPFDSPGVEGSAQPERFFLVAGMHRWHELLAEGDYGRPSETSARLVWLADKGPDAGIHVVAWADGYATAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPVEQVEKFKPYSTASLYAFAREGFLSTSGKRSPA*
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